To cite strainspy in publications, please use:

  Mallawaarachchi S, Tandon K, Rajan N, Marcelino V, Sandhu S, Bedoui
  S, Ingle D, Gunjur A, Tonkin-Hill G (2026). “Accurate detection of
  metagenomic strain-level associations using average nucleotide
  identity with StrainSpy.” _bioRxiv_. doi:10.64898/2026.08.30.748153
  <https://doi.org/10.64898/2026.08.30.748153>.
  <https://www.biorxiv.org/content/10.64898/2026.08.30.748153v1>.

A BibTeX entry for LaTeX users is

  @Article{,
    title = {Accurate detection of metagenomic strain-level associations using average nucleotide identity with StrainSpy},
    author = {Sudaraka Mallawaarachchi and Kshitij Tandon and Nikhil Rajan and Vannessa Rossetto Marcelino and Shahneen Sandhu and Sammy Bedoui and Danielle J. Ingle and Ashray Gunjur and Gerry Tonkin-Hill},
    journal = {bioRxiv},
    year = {2026},
    doi = {10.64898/2026.08.30.748153},
    url = {https://www.biorxiv.org/content/10.64898/2026.08.30.748153v1},
  }